org.aisb.bio.tools
Class MonomerComparator

java.lang.Object
  org.aisb.bio.tools.MonomerComparator

Direct Known Subclasses:

IdentityComparator, SimilarityMatrixComparator

public abstract class MonomerComparator

extends Object

This is the base implementation for comparing two monomers. A dynamic programming implementation could call anything based on this. Some implementations might be algorithmic, others might be based on similarity tables, and the implementation would not have to care.

Author:

Doug DeJulio

Constructor Summary

MonomerComparator()

Method Summary

abstract int

compare(Monomer m1, Monomer m2)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MonomerComparator

public MonomerComparator()

Method Detail

compare

public abstract int compare(Monomer m1,
                            Monomer m2)