A C D E F G H I L M N O P R S T V W

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Needleman - class org.aisb.bio.tools.Needleman.

This implements the Needleman/Wunsch algorithm, with gap penalties, including end gap penalties.

Needleman(MonomerComparator, int, int) - Constructor for class org.aisb.bio.tools.Needleman

This constructor is a little cleaner to use outside of contexts in which the command bean is really useful.

Nucleotide - class org.aisb.bio.things.Nucleotide.

This subclass of monomer specifically encodes nucleotides.

Nucleotide(Class, String, Character, int) - Constructor for class org.aisb.bio.things.Nucleotide