org.aisb.bio.tools
Interface FitnessFunction

All Known Implementing Classes:

PSSMFitnessFunction

public interface FitnessFunction

This interface defines the invocation of a fitness function. It does not assume any particular implementation.

Author:

Doug DeJulio

Method Summary

int	fitness(Sequence seq) Calculate the fitness of this sequence.

Method Detail

fitness

public int fitness(Sequence seq)

Calculate the fitness of this sequence.

Parameters:

seq - The sequence under consideration.

Returns:

An integer representing the fitness.