A C D E F G H I L M N O P R S T V

A

AminoAcid - class org.aisb.bio.things.AminoAcid.

This class describes the set of amino acids that make up protein sequences.

AminoAcid(Class, String, Character, int) - Constructor for class org.aisb.bio.things.AminoAcid

AsexualOrganism - class org.aisb.bio.things.evolution.AsexualOrganism.

This is an "organism" for the purpose of running evolutionary experiments.

AsexualOrganism() - Constructor for class org.aisb.bio.things.evolution.AsexualOrganism

AsexualPopulation - class org.aisb.bio.things.evolution.AsexualPopulation.

This represents an entire population of AsexualOrganisms.

AsexualPopulation() - Constructor for class org.aisb.bio.things.evolution.AsexualPopulation

add(int, Object) - Method in class org.aisb.bio.things.Sequence

add(Object) - Method in class org.aisb.bio.things.Sequence

addAll(Collection) - Method in class org.aisb.bio.things.Sequence

addAll(int, Collection) - Method in class org.aisb.bio.things.Sequence

addOrganism(float, float, AsexualOrganism) - Method in class org.aisb.bio.things.evolution.AsexualPopulation

appendFromString(String) - Method in class org.aisb.bio.things.Sequence