Hierarchy For All Packages

Package Hierarchies:

org.aisb.bio.assignments, org.aisb.bio.tests, org.aisb.bio.things, org.aisb.bio.things.evolution, org.aisb.bio.tools

Class Hierarchy

• class java.lang.Object
  • class org.aisb.bio.things.evolution.AsexualOrganism
  • class org.aisb.bio.things.evolution.AsexualPopulation
  • class org.aisb.bio.tools.DarwinsCrucible
  • class org.aisb.bio.tools.DynamicDuo
  • class org.aisb.bio.assignments.HomeworkB1
  • class org.aisb.bio.assignments.HomeworkB3
  • class org.aisb.bio.assignments.HomeworkTwo
  • class org.aisb.bio.things.Monomer
    • class org.aisb.bio.things.AminoAcid
    • class org.aisb.bio.things.Nucleotide
  • class org.aisb.bio.tools.MonomerComparator
    • class org.aisb.bio.tools.IdentityComparator
    • class org.aisb.bio.tools.SimilarityMatrixComparator
  • class org.aisb.bio.tools.PSSSMFitnessFunction (implements org.aisb.bio.tools.FitnessFunction)
  • class org.aisb.bio.things.Sequence (implements java.util.List)
  • class org.aisb.bio.tools.SequenceAligner
    • class org.aisb.bio.tools.Needleman
  • class org.aisb.bio.tools.SequenceFetcher
  • class org.aisb.bio.tests.SomeSimpleTests

Interface Hierarchy

• interface org.aisb.bio.tools.FitnessFunction